PlantScan™: a three-dimensional phenotyping platform for capturing the structural dynamic of plant development and growth

  • Xavier Raymond Richard Sirault CSIRO Plant Industry High Resolution Plant Phenomics Centre
  • Jurgen Fripp CSIRO ICT centre Australian e-Health
  • Anthony Paproki CSIRO ICT centre Australian e-Health
  • Peter Kuffner CSIRO Plant Industry High Resolution Plant Phenomics Centre
  • Chuong Nguyen CSIRO CMIS
  • Rongxin Li CSIRO ICT centre, Sydney
  • Helen Daily CSIRO Plant Industry High Resolution Plant Phenomics Centre
  • Jianming Guo CSIRO Plant Industry High Resolution Plant Phenomics Centre
  • Robert Furbank CSIRO Plant Industry High Resolution Plant Phenomics Centre
Keywords: Plant architecture, transformational technology, automated feature extraction, quantification

Abstract

PlantScan is an integrated analysis pipeline, seamlessly integrating hardware and software tools to provide automated, non-invasive analyses of plant structure (topology, surface orientation, number of leaves...), morphology (leaf size, shape, colour, area, volume...) and function. By utilising cutting edge information technology to automatically digitise plants in three dimensions, it enables plant scientists to better understand the complex interactions involved in plant growth, i.e., the plant's genetic make-up, its physical characteristics and the environment in which it grows, thus, providing essential information to populate functional structural plant models.

Author Biographies

Xavier Raymond Richard Sirault, CSIRO Plant Industry High Resolution Plant Phenomics Centre
Research Team Leader - Plant imaging and image analysis
Jurgen Fripp, CSIRO ICT centre Australian e-Health
Research Team Leader
Published
2013-06-03
Section
1B Reconstructing and observing plant structure